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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs6493228 chr15:30979829 C/A CHRNA7 chr15:32215641-32465219:+ 0.29 6.74 4.66E-11 Box Plot
THCA rs6493281 chr15:31064685 A/C CHRNA7 chr15:32215641-32465219:+ 0.28 6.29 7.3E-10 Box Plot
THCA rs649671 chr11:77550780 G/C INTS4L1 chr7:64601603-64694600:+ 0.44 8 9.72E-15 Box Plot
THCA rs6497503 chr16:20450134 A/G ZMYND12 chr1:42896000-42921938:- 0.27 6.12 1.91E-9 Box Plot
THCA rs6497998 chr16:27178313 A/G TUB chr11:8040791-8127659:+ -0.28 -5.92 6.25E-9 Box Plot
THCA rs650171 chr11:77498486 T/C INTS4L1 chr7:64601603-64694600:+ 0.6 9.82 7.7E-21 Box Plot
THCA rs6502643 chr17:18180291 A/G LOC162632 chr17:16614993-16707819:+ 0.37 5.97 4.57E-9 Box Plot
THCA rs6504366 chr17:63864937 G/A BPGM chr7:134331560-134364565:+ 0.32 5.98 4.43E-9 Box Plot
THCA rs652655 chr11:49251293 G/A FOLH1B chr11:89372395-89431886:+ 0.35 6.16 1.55E-9 Box Plot
THCA rs653212 chr11:49189552 C/G FOLH1B chr11:89372395-89431886:+ 0.48 7.9 1.88E-14 Box Plot
THCA rs6533318 chr4:108634439 C/T MRPL38 chr17:73894724-73901494:- 0.28 6.42 3.38E-10 Box Plot
THCA rs6542952 chr2:101083501 G/A LOC285359 chr3:101431278-101432259:+ 0.36 8.38 5.96E-16 Box Plot
THCA rs6542953 chr2:101102665 A/G LOC285359 chr3:101431278-101432259:+ 0.36 8.29 1.17E-15 Box Plot
THCA rs6542954 chr2:101103819 C/T LOC285359 chr3:101431278-101432259:+ 0.33 6.48 2.29E-10 Box Plot
THCA rs6542955 chr2:101103841 G/T LOC285359 chr3:101431278-101432259:+ 0.31 6.27 8.06E-10 Box Plot